RNAseq on Trinidad Haemagogus mosquitoes - SRA

SRX9901665: RNAseq on Trinidad Haemagogus mosquitoes
1 ILLUMINA (Illumina NovaSeq 6000) run: 39.7M spots, 11.9G bases, 4.5Gb downloads

Design: RNA was extracted using Trizol LS according to manufacturer's instructions from Haemagogus mosquito pools collected from location site and sent to Novogene Inc for sequencing.RNA-SeqcDNA library) pipeline, The Ribo-ZeroTM Magnetic kit (Illumina Inc.) was used to deplete the ribosomal RNA. Libraries were sequenced from both ends (150 bp) and the lncRNA pipeline was used to extract 150 bp paired end reads into FASTQ files.

Submitted by: The University of the West Indies

Study: Viral contigs associated with Trinidad Haemagogus mosquitoes

PRJNA689580 • SRP302516 • All experiments • All runs

show Abstracthide Abstract

Haemagogus species are poorly characterized mosquitoes with little data available on their viral transmission dynamics. Here we used a transcriptomic-based approach to map the RNA virome of field caught Haemagogus mosquitoes from twelve forested regions in Trinidad, West Indies.

Sample:

SAMN17384566 • SRS8080617 • All experiments • All runs

Organism: mosquito metagenome

Library:

Name: HMA

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: METATRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 39.7M spots, 11.9G bases, 4.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR13489053	39,660,040	11.9G	4.5Gb	2022-01-05

ID:: 12958637

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